API

Preprocessing

pp.merge_big_cell(adata, resolution, prefix, ...)

Merge STomics cellbin data to metacell by axis and celltype.

Tools

tl.aucell(adata, signatures[, ...])	Calculate enrichment of gene signatures for single cells.
tl.getDEG(adata, cluster[, qval_cutoff, ...])	Get DEGs for rank_genes_groups.
tl.removeBiasGenes(adata)	Remove bias genes for human single cell analysis.
tl.nhood_enrichment(adata[, coord_type, ...])	Calculate neighborhood enrichment.

Plotting

pl.plot_cellbin_gradient(adata, mask, tag, ...)	Plot cellbin gradient image.
pl.plot_cellbin_discrete(adata, mask, tag, ...)	Plot discrete cellbin images.
pl.getDefaultColors(n[, type])	A beautiful color series list for sci plotting!
pl.nhood_heatmap(adata[, coord_type, ...])	Plot neighborhood heatmap.