STutils.tl.getDEG

STutils.tl.getDEG(adata, cluster, qval_cutoff=0.1, mean_expr_cutoff=0.2, top_genes=200, layer=None, save='volcano_plot.pdf', key_added='rank_genes_groups')

Get DEGs for rank_genes_groups.

Args:

adata: adata object cluster: cluster tag qval_cutoff: qvalue cutoff, defaults to 0.1 mean_expr_cutoff: mean expression cutoff, defaults to 0.2 top_genes: number of top genes, defaults to 200 layer: adata layers, defaults to None save: if or not save volcano plot, defaults to “volcano_plot.pdf” key_added: DEG key, defaults to “rank_genes_groups”

Return type:

dict

Returns:

dict: a DEG dict.